Detailed information of SNP:
|
SNP ID:
sf0908363756(Gbrowse)
Chromosome: chr09 Position: 8363756 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 80.64% | 19.36% |
| All Indica | 741 | 68.29% | 31.71% |
| All Japonica | 493 | 99.19% | 0.81% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 339 | 64.60% | 35.40% |
| Indica II | 208 | 77.40% | 22.60% |
| Indica Intermediate | 194 | 64.95% | 35.05% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908363756 | G->A | LOC_Os09g14120(LOC_Os09g14120.1) | Synonymous |