Detailed information of SNP:



SNP ID: sf0908368264(Gbrowse)

Chromosome: chr09

Position: 8368264
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1417 95.84% 4.16%
All Indica797 94.10% 5.90%
All Japonica497 99.60% 0.40%
Aus67 88.06% 11.94%
Indica I374 97.06% 2.94%
Indica II212 92.45% 7.55%
Indica Intermediate211 90.52% 9.48%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0908368264 T->C LOC_Os09g14120(LOC_Os09g14120.1) INTRON