Detailed information of SNP:
SNP ID:
sf0908368264(Gbrowse)
Chromosome: chr09 Position: 8368264 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1417 | 95.84% | 4.16% |
All Indica | 797 | 94.10% | 5.90% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 88.06% | 11.94% |
Indica I | 374 | 97.06% | 2.94% |
Indica II | 212 | 92.45% | 7.55% |
Indica Intermediate | 211 | 90.52% | 9.48% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0908368264 | T->C | LOC_Os09g14120(LOC_Os09g14120.1) | INTRON |