Detailed information of SNP:
|
SNP ID:
sf0908368319(Gbrowse)
Chromosome: chr09 Position: 8368319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 97.51% | 2.49% |
| All Indica | 786 | 95.93% | 4.07% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908368319 | G->A | LOC_Os09g14120(LOC_Os09g14120.1) | INTRON |