Detailed information of SNP:
|
SNP ID:
sf0908387286(Gbrowse)
Chromosome: chr09 Position: 8387286 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 97.51% | 2.49% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908387286 | A->G | INTERGENIC | None |