Detailed information of SNP:
|
SNP ID:
sf0908387909(Gbrowse)
Chromosome: chr09 Position: 8387909 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 94.68% | 5.32% |
| All Indica | 779 | 92.81% | 7.19% |
| All Japonica | 491 | 97.76% | 2.24% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908387909 | T->C | LOC_Os09g14180(LOC_Os09g14180.1) | Synonymous |