Detailed information of SNP:
|
SNP ID:
sf0908523458(Gbrowse)
Chromosome: chr09 Position: 8523458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 65.06% | 34.94% |
| All Indica | 771 | 39.04% | 60.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 360 | 20.00% | 80.00% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 202 | 39.60% | 60.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908523458 | C->T | LOC_Os09g14430(LOC_Os09g14430.1) | Non-Synonymous SNP |