Detailed information of SNP:
|
SNP ID:
sf0908558223(Gbrowse)
Chromosome: chr09 Position: 8558223 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 76.93% | 23.07% |
| All Indica | 793 | 59.39% | 40.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 50.40% | 49.60% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908558223 | C->T | LOC_Os09g14480(LOC_Os09g14480.1) | INTRON |