Detailed information of SNP:
|
SNP ID:
sf0908593706(Gbrowse)
Chromosome: chr09 Position: 8593706 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 65.31% | 34.69% |
| All Indica | 794 | 76.57% | 23.43% |
| All Japonica | 465 | 41.08% | 58.92% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 90.03% | 9.97% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 308 | 17.86% | 82.14% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908593706 | A->C | INTERGENIC | None |