Detailed information of SNP:
|
SNP ID:
sf0908618471(Gbrowse)
Chromosome: chr09 Position: 8618471 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.75% | 32.25% |
| All Indica | 799 | 78.97% | 21.03% |
| All Japonica | 492 | 45.53% | 54.47% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 333 | 25.53% | 74.47% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908618471 | A->C | INTERGENIC | None |