Detailed information of SNP:
|
SNP ID:
sf0908638556(Gbrowse)
Chromosome: chr09 Position: 8638556 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 75.31% | 24.69% |
| All Indica | 774 | 62.79% | 37.21% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 362 | 66.30% | 33.70% |
| Indica II | 209 | 68.90% | 31.10% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908638556 | T->G | LOC_Os09g14590(LOC_Os09g14590.1) | INTRON |