Detailed information of SNP:
|
SNP ID:
sf0908657414(Gbrowse)
Chromosome: chr09 Position: 8657414 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 75.25% | 24.75% |
| All Indica | 777 | 57.40% | 42.60% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 369 | 58.54% | 41.46% |
| Indica II | 206 | 66.50% | 33.50% |
| Indica Intermediate | 202 | 46.04% | 53.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908657414 | T->C | INTERGENIC | None |