Detailed information of SNP:
|
SNP ID:
sf0908667779(Gbrowse)
Chromosome: chr09 Position: 8667779 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1318 | 87.33% | 12.67% |
| All Indica | 707 | 78.08% | 21.92% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 332 | 79.22% | 20.78% |
| Indica II | 197 | 78.68% | 21.32% |
| Indica Intermediate | 178 | 75.28% | 24.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908667779 | A->G | INTERGENIC | None |