Detailed information of SNP:
|
SNP ID:
sf0908677619(Gbrowse)
Chromosome: chr09 Position: 8677619 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 87.91% | 12.09% |
| All Indica | 748 | 83.96% | 16.04% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 351 | 85.19% | 14.81% |
| Indica II | 203 | 91.63% | 8.37% |
| Indica Intermediate | 194 | 73.71% | 26.29% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908677619 | T->G | LOC_Os09g14630(LOC_Os09g14630.1) | INTRON |