Detailed information of SNP:
|
SNP ID:
sf0908681566(Gbrowse)
Chromosome: chr09 Position: 8681566 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.38% | 3.62% |
| All Indica | 790 | 96.08% | 3.92% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 98.09% | 1.91% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908681566 | G->T | INTERGENIC | None |