Detailed information of SNP:
|
SNP ID:
sf0908682285(Gbrowse)
Chromosome: chr09 Position: 8682285 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 58.61% | 41.39% |
| All Indica | 795 | 72.20% | 27.80% |
| All Japonica | 494 | 33.20% | 66.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 209 | 41.15% | 58.85% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 334 | 16.47% | 83.53% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908682285 | T->C | LOC_Os09g14640(LOC_Os09g14640.1) | Non-Synonymous SNP |