Detailed information of SNP:
|
SNP ID:
sf0908682597(Gbrowse)
Chromosome: chr09 Position: 8682597 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 73.53% | 26.47% |
| All Indica | 777 | 54.18% | 45.82% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 56.76% | 43.24% |
| Indica II | 206 | 61.17% | 38.83% |
| Indica Intermediate | 201 | 42.29% | 57.71% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908682597 | G->A | LOC_Os09g14640(LOC_Os09g14640.1) | INTRON |