Detailed information of SNP:
|
SNP ID:
sf0908685138(Gbrowse)
Chromosome: chr09 Position: 8685138 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.39% | 43.61% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 497 | 33.80% | 66.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908685138 | A->G | INTERGENIC | None |