Detailed information of SNP:
|
SNP ID:
sf0908698571(Gbrowse)
Chromosome: chr09 Position: 8698571 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1314 | 79.83% | 20.17% |
| All Indica | 698 | 63.04% | 36.96% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 311 | 47.27% | 52.73% |
| Indica II | 206 | 86.41% | 13.59% |
| Indica Intermediate | 181 | 63.54% | 36.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908698571 | T->C | INTERGENIC | None |