Detailed information of SNP:
|
SNP ID:
sf0908698613(Gbrowse)
Chromosome: chr09 Position: 8698613 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 71.57% | 28.43% |
| All Indica | 762 | 49.61% | 50.39% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 31.43% | 68.57% |
| Indica II | 209 | 79.43% | 20.57% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908698613 | A->G | INTERGENIC | None |