Detailed information of SNP:
|
SNP ID:
sf0908705108(Gbrowse)
Chromosome: chr09 Position: 8705108 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 496 | 37.50% | 62.50% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 334 | 15.87% | 84.13% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908705108 | C->A | INTERGENIC | None |