Detailed information of SNP:
|
SNP ID:
sf0908708326(Gbrowse)
Chromosome: chr09 Position: 8708326 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 496 | 37.50% | 62.50% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 334 | 15.27% | 84.73% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908708326 | T->C | INTERGENIC | None |