Detailed information of SNP:
|
SNP ID:
sf0908708563(Gbrowse)
Chromosome: chr09 Position: 8708563 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 72.32% | 27.68% |
| All Indica | 797 | 52.32% | 47.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 43.85% | 56.15% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908708563 | T->C | INTERGENIC | None |