Detailed information of SNP:
|
SNP ID:
sf0908709871(Gbrowse)
Chromosome: chr09 Position: 8709871 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.60% | 44.40% |
| All Indica | 799 | 25.78% | 74.22% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908709871 | G->A | LOC_Os09g14680(LOC_Os09g14680.1) | INTRON |