Detailed information of SNP:
|
SNP ID:
sf0908733370(Gbrowse)
Chromosome: chr09 Position: 8733370 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 64.12% | 35.88% |
| All Indica | 762 | 43.44% | 56.56% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 61 | 32.79% | 67.21% |
| Indica I | 358 | 27.09% | 72.91% |
| Indica II | 204 | 72.55% | 27.45% |
| Indica Intermediate | 200 | 43.00% | 57.00% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908733370 | T->G | INTERGENIC | None |