Detailed information of SNP:
|
SNP ID:
sf0908735501(Gbrowse)
Chromosome: chr09 Position: 8735501 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 91.87% | 8.13% |
| All Indica | 763 | 88.20% | 11.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 354 | 86.72% | 13.28% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908735501 | C->T | INTERGENIC | None |