Detailed information of SNP:
|
SNP ID:
sf0908745390(Gbrowse)
Chromosome: chr09 Position: 8745390 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 64.24% | 35.76% |
| All Indica | 794 | 76.32% | 23.68% |
| All Japonica | 497 | 39.84% | 60.16% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 213 | 42.72% | 57.28% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 17.91% | 82.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908745390 | T->A | LOC_Os09g14720(LOC_Os09g14720.1) | INTRON |