Detailed information of SNP:
|
SNP ID:
sf0908754950(Gbrowse)
Chromosome: chr09 Position: 8754950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 96.23% | 3.77% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 464 | 90.09% | 9.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 72 | 43.06% | 56.94% |
| Japonica Intermediate | 60 | 95.00% | 5.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908754950 | G->A | LOC_Os09g14740(LOC_Os09g14740.1) | SNPs that introduce stop codons |