Detailed information of SNP:
|
SNP ID:
sf0908758964(Gbrowse)
Chromosome: chr09 Position: 8758964 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.03% | 44.97% |
| All Indica | 793 | 33.29% | 66.71% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 210 | 63.33% | 36.67% |
| Indica Intermediate | 208 | 31.25% | 68.75% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908758964 | C->T | INTERGENIC | None |