Detailed information of SNP:
|
SNP ID:
sf0908761775(Gbrowse)
Chromosome: chr09 Position: 8761775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 62.46% | 37.54% |
| All Indica | 793 | 38.08% | 61.92% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 57 | 89.47% | 10.53% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 211 | 71.56% | 28.44% |
| Indica Intermediate | 207 | 51.69% | 48.31% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908761775 | C->T | INTERGENIC | None |