Detailed information of SNP:
|
SNP ID:
sf0908781044(Gbrowse)
Chromosome: chr09 Position: 8781044 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 86.38% | 13.62% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908781044 | T->C | INTERGENIC | None |