Detailed information of SNP:
|
SNP ID:
sf0908830498(Gbrowse)
Chromosome: chr09 Position: 8830498 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 86.53% | 13.47% |
| All Indica | 749 | 79.71% | 20.29% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 55 | 56.36% | 43.64% |
| Indica I | 347 | 64.27% | 35.73% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 195 | 89.74% | 10.26% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908830498 | A->G | INTERGENIC | None |