Detailed information of SNP:
|
SNP ID:
sf0908837283(Gbrowse)
Chromosome: chr09 Position: 8837283 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 93.58% | 6.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 482 | 82.99% | 17.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 86 | 55.81% | 44.19% |
| Japonica Intermediate | 63 | 55.56% | 44.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908837283 | T->C | INTERGENIC | None |