Detailed information of SNP:
|
SNP ID:
sf0908877750(Gbrowse)
Chromosome: chr09 Position: 8877750 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 64.38% | 35.62% |
| All Indica | 781 | 37.00% | 63.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 18.41% | 81.59% |
| Indica II | 211 | 72.51% | 27.49% |
| Indica Intermediate | 206 | 33.50% | 66.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908877750 | A->G | INTERGENIC | None |