Detailed information of SNP:
|
SNP ID:
sf0908890591(Gbrowse)
Chromosome: chr09 Position: 8890591 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 56.34% | 43.66% |
| All Indica | 792 | 24.62% | 75.38% |
| All Japonica | 482 | 99.38% | 0.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 7.77% | 92.23% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 210 | 20.48% | 79.52% |
| Temperate Japonica | 322 | 99.69% | 0.31% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908890591 | A->G | INTERGENIC | None |