Detailed information of SNP:
|
SNP ID:
sf0908891006(Gbrowse)
Chromosome: chr09 Position: 8891006 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 82.97% | 17.03% |
| All Indica | 729 | 69.27% | 30.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 344 | 68.60% | 31.40% |
| Indica II | 194 | 81.44% | 18.56% |
| Indica Intermediate | 191 | 58.12% | 41.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908891006 | A->G | INTERGENIC | None |