Detailed information of SNP:
|
SNP ID:
sf0908902382(Gbrowse)
Chromosome: chr09 Position: 8902382 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 94.90% | 5.10% |
| All Indica | 792 | 98.36% | 1.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908902382 | A->G | LOC_Os09g14900(LOC_Os09g14900.1) | Synonymous |