Detailed information of SNP:
|
SNP ID:
sf0908934994(Gbrowse)
Chromosome: chr09 Position: 8934994 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.69% | 11.31% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 494 | 74.09% | 25.91% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 91 | 13.19% | 86.81% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908934994 | C->A | INTERGENIC | None |