Detailed information of SNP:
|
SNP ID:
sf0908950186(Gbrowse)
Chromosome: chr09 Position: 8950186 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 99.12% | 0.88% |
| All Indica | 775 | 100.00% | 0.00% |
| All Japonica | 461 | 97.40% | 2.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 199 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 96.36% | 3.64% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908950186 | A->C | INTERGENIC | None |