Detailed information of SNP:
|
SNP ID:
sf0908959273(Gbrowse)
Chromosome: chr09 Position: 8959273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1182 | 89.76% | 10.24% |
| All Indica | 611 | 82.16% | 17.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 25 | 64.00% | 36.00% |
| Indica I | 265 | 85.66% | 14.34% |
| Indica II | 184 | 79.35% | 20.65% |
| Indica Intermediate | 162 | 79.63% | 20.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908959273 | C->T | INTERGENIC | None |