Detailed information of SNP:
SNP ID:
sf0908959273(Gbrowse)
Chromosome: chr09 Position: 8959273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1182 | 89.76% | 10.24% |
All Indica | 611 | 82.16% | 17.84% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 25 | 64.00% | 36.00% |
Indica I | 265 | 85.66% | 14.34% |
Indica II | 184 | 79.35% | 20.65% |
Indica Intermediate | 162 | 79.63% | 20.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 13 | 100.00% | 0.00% |
Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0908959273 | C->T | INTERGENIC | None |