Detailed information of SNP:
|
SNP ID:
sf0908959678(Gbrowse)
Chromosome: chr09 Position: 8959678 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 52.23% | 47.77% |
| All Indica | 798 | 23.93% | 76.07% |
| All Japonica | 492 | 91.06% | 8.94% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 16.67% | 83.33% |
| Temperate Japonica | 333 | 93.09% | 6.91% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908959678 | C->G | INTERGENIC | None |