Detailed information of SNP:
|
SNP ID:
sf0908962831(Gbrowse)
Chromosome: chr09 Position: 8962831 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.50% | 31.50% |
| All Indica | 799 | 78.47% | 21.53% |
| All Japonica | 497 | 46.68% | 53.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908962831 | A->G | INTERGENIC | None |