Detailed information of SNP:
|
SNP ID:
sf0908963729(Gbrowse)
Chromosome: chr09 Position: 8963729 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 50.29% | 49.71% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 45 | 68.89% | 31.11% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 34.29% | 65.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908963729 | C->T | INTERGENIC | None |