Detailed information of SNP:
|
SNP ID:
sf0908997892(Gbrowse)
Chromosome: chr09 Position: 8997892 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 62.19% | 37.81% |
| All Indica | 795 | 91.19% | 8.81% |
| All Japonica | 491 | 12.63% | 87.37% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 329 | 15.81% | 84.19% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908997892 | C->T | INTERGENIC | None |