Detailed information of SNP:
|
SNP ID:
sf0908999769(Gbrowse)
Chromosome: chr09 Position: 8999769 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1269 | 94.64% | 5.36% |
| All Indica | 771 | 97.02% | 2.98% |
| All Japonica | 382 | 90.58% | 9.42% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 360 | 98.89% | 1.11% |
| Indica II | 203 | 98.03% | 1.97% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 234 | 91.03% | 8.97% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 56 | 78.57% | 21.43% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0908999769 | C->T | INTERGENIC | None |