Detailed information of SNP:
|
SNP ID:
sf0909005840(Gbrowse)
Chromosome: chr09 Position: 9005840 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.87% | 29.13% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 38.81% | 61.19% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909005840 | A->G | INTERGENIC | None |