Detailed information of SNP:
|
SNP ID:
sf0909008782(Gbrowse)
Chromosome: chr09 Position: 9008782 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.54% | 34.46% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 494 | 23.08% | 76.92% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 332 | 30.42% | 69.58% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909008782 | G->A | INTERGENIC | None |