Detailed information of SNP:
|
SNP ID:
sf0909010340(Gbrowse)
Chromosome: chr09 Position: 9010340 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 62.50% | 37.50% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 491 | 13.24% | 86.76% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 329 | 17.93% | 82.07% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909010340 | C->T | INTERGENIC | None |