Detailed information of SNP:
|
SNP ID:
sf0909013179(Gbrowse)
Chromosome: chr09 Position: 9013179 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 56.07% | 43.93% |
| All Indica | 780 | 30.00% | 70.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 368 | 32.34% | 67.66% |
| Indica II | 209 | 24.88% | 75.12% |
| Indica Intermediate | 203 | 31.03% | 68.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909013179 | G->A | INTERGENIC | None |