Detailed information of SNP:
|
SNP ID:
sf0909035056(Gbrowse)
Chromosome: chr09 Position: 9035056 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 57.46% | 42.54% |
| All Indica | 786 | 86.90% | 13.10% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909035056 | T->C | LOC_Os09g15010(LOC_Os09g15010.1) | INTRON |