Detailed information of SNP:
|
SNP ID:
sf0909035510(Gbrowse)
Chromosome: chr09 Position: 9035510 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1270 | 84.65% | 15.35% |
| All Indica | 658 | 74.62% | 25.38% |
| All Japonica | 493 | 94.73% | 5.27% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 310 | 71.29% | 28.71% |
| Indica II | 183 | 78.14% | 21.86% |
| Indica Intermediate | 165 | 76.97% | 23.03% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909035510 | A->G | LOC_Os09g15010(LOC_Os09g15010.1) | INTRON |